{ "_id": "6a116cc6acfb0bcc41cf4cdb", "Type": "Package", "Package": "ciftiTools", "Title": "Tools for Reading, Writing, Viewing and Manipulating CIFTI Files", "Version": "0.19.0", "Authors@R": "c(\nperson(given = \"Amanda\",\nfamily = \"Mejia\",\nemail = \"mandy.mejia@gmail.com\",\nrole = c(\"aut\", \"cre\")),\nperson(given = \"Damon\",\nfamily = \"Pham\",\nemail = \"damondpham@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-7563-4727\")),\nperson(given = \"John\",\nfamily = \"Muschelli\",\nemail = \"muschellij2@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0001-6469-1750\"))\n)", "Maintainer": "Amanda Mejia ", "Description": "CIFTI files contain brain imaging data in \"grayordinates,\"\nwhich represent the gray matter as cortical surface vertices\n(left and right) and subcortical voxels (cerebellum, basal\nganglia, and other deep gray matter). 'ciftiTools' provides a\nunified environment for reading, writing, visualizing and\nmanipulating CIFTI-format data. It supports the \"dscalar,\"\n\"dlabel,\" and \"dtseries\" intents. Grayordinate data is read in\nas a \"xifti\" object, which is structured for convenient access\nto the data and metadata, and includes support for surface\ngeometry files to enable spatially-dependent functionality such\nas static or interactive visualizations and smoothing.", "License": "GPL-3", "URL": "https://github.com/mandymejia/ciftiTools", "BugReports": "https://github.com/mandymejia/ciftiTools/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Language": "en-US", "Config/pak/sysreqs": "cmake libfreetype6-dev libglu1-mesa-dev make\ntexlive libpng-dev libuv1-dev libxml2-dev libgl1-mesa-dev\nzlib1g-dev", "Repository": "https://mandymejia.r-universe.dev", "Date/Publication": "2026-03-24 16:19:07 UTC", "RemoteUrl": "https://github.com/mandymejia/ciftitools", "RemoteRef": "HEAD", "RemoteSha": "1dc7110788c6cb12f15f28eb0a2c012df0387047", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-23 08:56:10 UTC", "User": "root" }, "Author": "Amanda Mejia [aut, cre],\nDamon Pham [aut] (ORCID: ),\nJohn Muschelli [ctb] (ORCID: )", "MD5sum": "c8db2501c30c294f9b770e39d9a7c824", "_user": "mandymejia", "_type": "src", "_file": "ciftiTools_0.19.0.tar.gz", "_fileid": "bc9669d296ae803be6477115d8856e31b745e2e4e1cebb26a7fd2cabd04fe806", "_filesize": 5606766, "_sha256": "bc9669d296ae803be6477115d8856e31b745e2e4e1cebb26a7fd2cabd04fe806", "_created": "2026-05-23T08:56:10.000Z", "_published": "2026-05-23T09:00:54.157Z", "_distro": "noble", "_jobs": [ { "job": 77510814165, "time": 222, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7175806910" }, { "job": 77510814166, "time": 211, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7175806024" }, { "job": 77510814163, "time": 140, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7175798924" }, { "job": 77510814164, "time": 141, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7175798932" }, { "job": 77510558769, "time": 310, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7175787335" }, { "job": 77510814160, "time": 194, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7175804637" }, { "job": 77510814190, "time": 131, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7175799278" }, { "job": 77510814196, "time": 141, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7175800236" }, { "job": 77510814191, "time": 115, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7175797983" } ], "_buildurl": "https://github.com/r-universe/mandymejia/actions/runs/26328552604", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mandymejia/ciftitools", "_commit": { "id": "1dc7110788c6cb12f15f28eb0a2c012df0387047", "author": "Damon Pham ", "committer": "Damon Pham ", "message": "Merge branch '19.0'\n", "time": 1774369147 }, "_maintainer": { "name": "Amanda Mejia", "email": "mandy.mejia@gmail.com", "login": "mandymejia", "twitter": "@mandyfmejia", "description": "Associate Professor in the Department of Statistics at Indiana University. 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"infoCIfTI", "infocii", "is_cifti", "is_xifti", "is.cifti", "is.surf", "is.xifti", "isCIfTI", "load_parc", "load_surf", "make_color_pal", "make_surf", "mask_surf", "merge_xifti", "move_from_mwall", "move_from_submask", "move_to_mwall", "move_to_submask", "newdata_xifti", "parc_add_subcortex", "parc_borders", "parc_vals_to_xifti", "read_cifti", "read_surf", "read_xifti", "read_xifti2", "readCIfTI", "readcii", "remap_cifti", "remap_gifti", "remap_xifti", "remapCIfTI", "remapcii", "remove_xifti", "resample_cifti", "resample_cifti_from_template", "resample_gifti", "resample_surf", "resample_xifti", "resampleCIfTI", "resamplecii", "resampleGIfTI", "resamplegii", "rotate_surf", "ROY_BIG_BL", "run_wb_cmd", "scale_xifti", "select_xifti", "separate_cifti", "separateCIfTI", "separatecii", "set_names_xifti", "smooth_cifti", "smooth_gifti", "smooth_xifti", "smoothCIfTI", "smoothcii", "smoothGIfTI", "smoothgii", "substructure_table", "supported_intents", "surf_area", "transform_xifti", 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matrix", "topics": [ "as.matrix.xifti" ] }, { "page": "as.xifti", "title": "Assemble a '\"xifti\"' from data", "concept": [ "reading" ], "topics": [ "as.cifti", "as.xifti", "as_cifti", "as_xifti" ] }, { "page": "boundary_mask_surf", "title": "Boundary region of a mask", "concept": [ "surface-related" ], "topics": [ "boundary_mask_surf" ] }, { "page": "ciftiTools", "title": "ciftiTools: Tools for Reading and Visualizing CIFTI Brain Files", "topics": [ "ciftiTools-package", "ciftiTools" ] }, { "page": "ciftiTools.files", "title": "'ciftiTools' files", "topics": [ "ciftiTools.files" ] }, { "page": "ciftiTools.getOption", "title": "Get a 'ciftiTools' option", "topics": [ "ciftiTools.getOption" ] }, { "page": "ciftiTools.listOptions", "title": "List 'ciftiTools' options", "topics": [ "ciftiTools.listOptions" ] }, { "page": "ciftiTools.setOption", "title": "Set a 'ciftiTools' option", "topics": [ "ciftiTools.setOption" ] }, { "page": "combine_xifti", "title": "Combine '\"xifti\"'s with non-overlapping brain structures", "concept": [ "manipulating xifti" ], "topics": [ "combine_xifti" ] }, { "page": "convert_xifti", "title": "Convert '\"xifti\"'", "concept": [ "manipulating xifti" ], "topics": [ "convert_to_dlabel", "convert_to_dscalar", "convert_to_dtseries", "convert_xifti" ] }, { "page": "dim.xifti", "title": "Dimensions of a '\"xifti\"'", "topics": [ "dim.xifti" ] }, { "page": "edit_mask_surf", "title": "Edit mask on surface", "concept": [ "surface-related" ], "topics": [ "dilate_mask_surf", "edit_mask_surf", "erode_mask_surf" ] }, { "page": "even_vert_samp", "title": "Evenly sample vertices of mesh", "concept": [ "surface-related" ], "topics": [ "even_vert_samp" ] }, { "page": "expand_color_pal", "title": "Interpolates between entries in the input palette to make a larger palette with COLOR_RES entries.", "concept": [ "coloring" ], "topics": [ "expand_color_pal" ] }, { "page": "faces_Param", "title": "faces", "topics": [ "faces_Param" ] }, { "page": "fix_xifti", "title": "Fix a '\"xifti\"'", "topics": [ "fix_xifti" ] }, { "page": "get_wb_cmd_path", "title": "Get the Connectome Workbench command path", "topics": [ "get_wb_cmd_path" ] }, { "page": "impute_xifti", "title": "Impute '\"xifti\"' data", "concept": [ "manipulating xifti" ], "topics": [ "impute_xifti" ] }, { "page": "infer_resolution", "title": "Infer resolution from '\"xifti\"' and surfaces", "topics": [ "infer_resolution" ] }, { "page": "info_cifti", "title": "Get CIFTI metadata", "concept": [ "reading" ], "topics": [ "infoCIfTI", "infocii", "info_cifti" ] }, { "page": "is.cifti", "title": "Validate a '\"xifti\"' object", "concept": [ "common" ], "topics": [ "is.cifti", "isCIfTI", "is_cifti" ] }, { "page": "is.surf", "title": "Validate a '\"surf\"' object (vertices + faces)", "concept": [ "surface-related" ], "topics": [ "is.surf" ] }, { "page": "is.xifti", "title": "Validate a '\"xifti\"' object.", "topics": [ "is.xifti", "is_xifti" ] }, { "page": "load_parc", "title": "Load a parcellation included in 'ciftiTools'", "concept": [ "parcellation-related", "reading" ], "topics": [ "load_parc" ] }, { "page": "load_surf", "title": "Load a '\"surf\"' included in 'ciftiTools'", "concept": [ "reading", "surface-related" ], "topics": [ "load_surf" ] }, { "page": "make_color_pal", "title": "Make a color palette.", "concept": [ "coloring" ], "topics": [ "make_color_pal" ] }, { "page": "mask_Param_vertices", "title": "mask: vertices", "topics": [ "mask_Param_vertices" ] }, { "page": "mask_surf", "title": "Mask surface", "concept": [ "surface-related" ], "topics": [ "mask_surf" ] }, { "page": "merge_xifti", "title": "Concatenate '\"xifti\"'s", "concept": [ "manipulating xifti" ], "topics": [ "merge_xifti" ] }, { "page": "move_from_mwall", "title": "Move data locations from medial wall", "topics": [ "move_from_mwall" ] }, { "page": "move_from_submask", "title": "Move data locations from subcortex mask", "topics": [ "move_from_submask" ] }, { "page": "move_to_mwall", "title": "Move data locations to the medial wall", "concept": [ "manipulating xifti" ], "topics": [ "move_to_mwall" ] }, { "page": "move_to_submask", "title": "Move data locations to the subcortex mask", "concept": [ "manipulating xifti" ], "topics": [ "move_to_submask" ] }, { "page": "newdata_xifti", "title": "Replace the data in a '\"xifti\"'", "concept": [ "manipulating xifti" ], "topics": [ "newdata_xifti" ] }, { "page": "parc_add_subcortex", "title": "Add subcortex to cortical parcellation", "concept": [ "parcellation-related" ], "topics": [ "parc_add_subcortex" ] }, { "page": "parc_borders", "title": "Parcellation borders", "concept": [ "parcellation-related" ], "topics": [ "parc_borders" ] }, { "page": "parc_vals_to_xifti", "title": "Convert parcellation values to '\"xifti\"'", "concept": [ "parcellation-related" ], "topics": [ "parc_vals_to_xifti" ] }, { "page": "plot.surf", "title": "S3 method: plot surface", "topics": [ "plot.surf" ] }, { "page": "plot.xifti", "title": "S3 method: use 'view_xifti' to plot a '\"xifti\"' object", "topics": [ "plot.xifti" ] }, { "page": "read_cifti", "title": "Read a CIFTI file", "concept": [ "common", "reading" ], "topics": [ "readCIfTI", "readcii", "read_cifti", "read_xifti" ] }, { "page": "read_surf", "title": "Get a '\"surf\"' object", "concept": [ "reading", "surface-related" ], "topics": [ "make_surf", "read_surf" ] }, { "page": "read_xifti2", "title": "Read in GIFTI files as a '\"xifti\"' object", "concept": [ "reading" ], "topics": [ "read_xifti2" ] }, { "page": "remap_cifti", "title": "Remap CIFTI data", "concept": [ "manipulating xifti" ], "topics": [ "remapCIfTI", "remapcii", "remap_cifti", "remap_xifti" ] }, { "page": "remap_gifti", "title": "Remap GIFTI metric or label data", "concept": [ "gifting" ], "topics": [ "remap_gifti" ] }, { "page": "remove_xifti", "title": "Remove a component from a '\"xifti\"'", "concept": [ "manipulating xifti" ], "topics": [ "remove_xifti" ] }, { "page": "resample_cifti", "title": "Resample CIFTI data", "concept": [ "common", "manipulating xifti" ], "topics": [ "resampleCIfTI", "resamplecii", "resample_cifti", "resample_xifti" ] }, { "page": "resample_cifti_from_template", "title": "Resample a CIFTI from a template", "concept": [ "manipulating xifti" ], "topics": [ "resample_cifti_from_template" ] }, { "page": "resample_gifti", "title": "Resample a GIFTI file (with its ROI)", "concept": [ "gifting" ], "topics": [ "resampleGIfTI", "resamplegii", "resample_gifti" ] }, { "page": "resample_surf", "title": "Resample a '\"surf\"' object", "concept": [ "surface-related" ], "topics": [ "resample_surf" ] }, { "page": "rotate_surf", "title": "Rotate a '\"surf\"' object", "concept": [ "surface-related" ], "topics": [ "rotate_surf" ] }, { "page": "ROY_BIG_BL", "title": "\"ROY_BIG_BL\" color palette", "concept": [ "coloring" ], "topics": [ "ROY_BIG_BL" ] }, { "page": "run_wb_cmd", "title": "Wrapper for Connectome Workbench Commands", "topics": [ "run_wb_cmd" ] }, { "page": "S3_Math", "title": "'\"xifti\"' S3 Math methods", "topics": [ "Math.xifti", "S3_Math" ] }, { "page": "S3_Ops", "title": "'\"xifti\"' S3 Ops methods", "topics": [ "Ops.xifti", "S3_Ops" ] }, { "page": "S3_Summary", "title": "'\"xifti\"' S3 Summary methods", "topics": [ "S3_Summary", "Summary.xifti" ] }, { "page": "scale_xifti", "title": "Scale CIFTI", "concept": [ "manipulating xifti" ], "topics": [ "scale_xifti" ] }, { "page": "select_xifti", "title": "Select columns of a '\"xifti\"'", "concept": [ "manipulating xifti" ], "topics": [ "select_xifti" ] }, { "page": "separate_cifti", "title": "Separate a CIFTI file", "concept": [ "writing" ], "topics": [ "separateCIfTI", "separatecii", "separate_cifti" ] }, { "page": "set_names_xifti", "title": "Set '\"xifti\"' column names", "concept": [ "manipulating xifti" ], "topics": [ "set_names_xifti" ] }, { "page": "smooth_cifti", "title": "Smooth CIFTI data", "concept": [ "common", "manipulating xifti" ], "topics": [ "smoothCIfTI", "smoothcii", 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