{ "_id": "6a498e9d6d67900babdfb3a1", "Type": "Package", "Package": "hrf", "Title": "Hemodynamic Response Function", "Version": "0.1.3", "Authors@R": "c(\nperson(given = \"Amanda\",\nfamily = \"Mejia\",\nemail = \"mandy.mejia@gmail.com\",\nrole = c(\"aut\", \"cre\")),\nperson(given = \"Damon\",\nfamily = \"Pham\",\nemail = \"damondpham@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0001-7563-4727\")),\nperson(given = \"David\",\nfamily = \"Bolin\",\nemail = \"david.bolin@kaust.edu.sa\",\nrole = c(\"ctb\")),\nperson(given = \"Yu (Ryan)\",\nfamily = \"Yue\",\nemail = \"yybaruch@gmail.com\",\nrole = c(\"ctb\")),\nperson(given = \"Daniel\",\nfamily = \"Spencer\",\nemail = \"danieladamspencer@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-9705-3605\")),\nperson(given = \"Sarah\",\nfamily = \"Ryan\",\nemail = \"sarahryan320@gmail.com\",\nrole = c(\"ctb\"))\n)", "Maintainer": "Amanda Mejia ", "Description": "Computes the hemodynamic response function (HRF) for task\nfunctional magnetic resonance imaging (fMRI) data. Also\nincludes functions for constructing a design matrix from task\nfMRI event timings, and for comparing multiple design matrices\nin a general linear model (GLM). A wrapper function is provided\nfor GLM analysis of CIFTI-format data. Lastly, there are\nsupporting functions which provide visual summaries of the HRFs\nand design matrices.", "License": "GPL-3", "URL": "https://github.com/mandymejia/hrf", "BugReports": "https://github.com/mandymejia/hrf/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Language": "en-US", "Config/pak/sysreqs": "cmake libfreetype6-dev libglu1-mesa-dev make\ntexlive libicu-dev libpng-dev libuv1-dev libxml2-dev\nlibgl1-mesa-dev zlib1g-dev", "Repository": "https://mandymejia.r-universe.dev", "Date/Publication": "2025-01-30 21:12:12 UTC", "RemoteUrl": "https://github.com/mandymejia/hrf", "RemoteRef": "HEAD", "RemoteSha": "2fabb578e55313f41ec52655934ef1e896e15987", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-22 10:18:31 UTC", "User": "root" }, "Author": "Amanda Mejia [aut, cre],\nDamon Pham [ctb] (ORCID: ),\nDavid Bolin [ctb],\nYu (Ryan) Yue [ctb],\nDaniel Spencer [aut] (ORCID: ),\nSarah Ryan [ctb]", "_user": "mandymejia", "_type": "src", "_file": "hrf_0.1.3.tar.gz", "_fileid": "https://r2.ropensci.org/69f5fc6604447b983befedc97bd676763f8b3a4b5e977260eb1e338044227b45", "_filesize": 418553, "_sha256": "69f5fc6604447b983befedc97bd676763f8b3a4b5e977260eb1e338044227b45", "_expires": "2026-10-12T22:52:12.000Z", "_created": "2026-06-22T10:18:31.000Z", "_published": "2026-07-04T22:52:13.697Z", "_jobs": [ { "job": 85173589500, "time": 227, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7789518598" }, { "job": 85173589472, "time": 228, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7789519399" }, { "job": 85173589402, "time": 166, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7789486851" }, { "job": 85173589319, "time": 195, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7789494819" }, { "job": 85173589093, "time": 267, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7789433704" }, { "job": 85173589247, "time": 424, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7789592244" }, { "job": 85173589471, "time": 147, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7789601399" }, { "job": 85173589313, "time": 121, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7789479242" }, { "job": 85173589265, "time": 110, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7789475173" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092", "_status": "success", "_upstream": "https://github.com/mandymejia/hrf", "_commit": { "id": "2fabb578e55313f41ec52655934ef1e896e15987", "author": "Damon Pham ", "committer": "Damon Pham ", "message": "Knit README and add badges\n", "time": 1738271532 }, "_maintainer": { "name": "Amanda Mejia", "email": "mandy.mejia@gmail.com", "login": "mandymejia", "twitter": "@mandyfmejia", "description": "Associate Professor in the Department of Statistics at Indiana University. PI of the StatMIND (Statistical Methods for Individualized Neuro-Discovery) lab.", "uuid": 5199186 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "car", "role": "Imports" }, { "package": "ciftiTools", "version": ">= 0.15.0", "role": "Imports" }, { "package": "fMRItools", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tidyr", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" } ], "_owner": "mandymejia", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 4, "_contributors": [ { "user": "damondpham", "count": 14, "uuid": 14958204 }, { "user": "mandymejia", "count": 1, "uuid": 5199186 } ], "_userbio": { "uuid": 5199186, "type": "user", "name": "Mandy Mejia", "followers": 80, "description": "Associate Professor in the Department of Statistics at Indiana University. PI of the StatMIND (Statistical Methods for Individualized Neuro-Discovery) lab." }, "_downloads": { "count": 224, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hrf" }, "_devurl": "https://github.com/mandymejia/hrf", "_searchresults": 13, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/hrf.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/mandymejia/hrf", "_realowner": "mandymejia", "_cranurl": true, "_releases": [ { "version": "0.1.3", "date": "2025-01-30" } ], "_exports": [ "cderiv", "do_QC", "HRF_calc", "HRF_main", "HRF96", "make_design", "multiGLM", "multiGLM_fun", "plot_design", "plot_design_image", "plot_design_line" ], "_help": [ { "page": "aic_Param", "title": "aic", "topics": [ "aic_Param" ] }, { "page": "ar_order_Param", "title": "ar_order", "topics": [ "ar_order_Param" ] }, { "page": "ar_smooth_Param", "title": "ar_smooth", "topics": [ "ar_smooth_Param" ] }, { "page": "BOLD_Param_BayesGLM", "title": "BOLD", "topics": [ "BOLD_Param_BayesGLM" ] }, { "page": "brainstructures_Param_BayesGLM", "title": "brainstructures", "topics": [ "brainstructures_Param_BayesGLM" ] }, { "page": "cderiv", "title": "Central derivative", "topics": [ "cderiv" ] }, { "page": "Connectome_Workbench_Description", "title": "Connectome Workbench", "topics": [ "Connectome_Workbench_Description" ] }, { "page": "design_Param_BayesGLM", "title": "design", "topics": [ "design_Param_BayesGLM" ] }, { "page": "do_QC", "title": "Mask out invalid data", "topics": [ "do_QC" ] }, { "page": "faces_Param", "title": "faces", "topics": [ "faces_Param" ] }, { "page": "field_names_Param", "title": "field_names", "topics": [ "field_names_Param" ] }, { "page": "hpf_Param_BayesGLM", "title": "hpf", "topics": [ "hpf_Param_BayesGLM" ] }, { "page": "HRF_calc", "title": "Canonical HRF and Derivatives", "topics": [ "HRF_calc" ] }, { "page": "HRF_main", "title": "Canonical (double-gamma) HRF", "topics": [ "HRF_main" ] }, { "page": "HRF96", "title": "Canonical (double-gamma) HRF (old one from SPM96, Glover)", "topics": [ "HRF96" ] }, { "page": "make_design", "title": "Make design matrix", "topics": [ "make_design" ] }, { "page": "mask_Param_vertices", "title": "mask: vertices", "topics": [ "mask_Param_vertices" ] }, { "page": "mean_var_Tol_Param", "title": "mean and variance tolerance", "topics": [ "mean_var_Tol_Param" ] }, { "page": "multiGLM", "title": "multiGLM for CIFTI", "topics": [ "multiGLM" ] }, { "page": "multiGLM_fun", "title": "multiGLM0", "topics": [ "multiGLM_fun" ] }, { "page": "nuisance_Param_BayesGLM", "title": "nuisance", "topics": [ "nuisance_Param_BayesGLM" ] }, { "page": "plot_design", "title": "Plot design matrix", "topics": [ "plot_design", "plot_design_image", "plot_design_line" ] }, { "page": "plot.BfMRI_design", "title": "S3 method: use 'view_xifti' to plot a '\"BGLM\"' object", "topics": [ "plot.BfMRI_design" ] }, { "page": "resamp_res_Param_BayesGLM", "title": "resamp_res", "topics": [ "resamp_res_Param_BayesGLM" ] }, { "page": "scale_BOLD_Param", "title": "scale_BOLD", "topics": [ "scale_BOLD_Param" ] }, { "page": "scrub_Param_BayesGLM", "title": "scrub", "topics": [ "scrub_Param_BayesGLM" ] }, { "page": "session_names_Param", "title": "session_names", "topics": [ "session_names_Param" ] }, { "page": "summary.BfMRI_design", "title": "Summarize a '\"BfMRI_design\"' object", "topics": [ "print.BfMRI_design", "print.summary.BfMRI_design", "summary.BfMRI_design" ] }, { "page": "surfaces_Param_BayesGLM", "title": "surfaces", "topics": [ "surfaces_Param_BayesGLM" ] }, { "page": "TR_Param_BayesGLM", "title": "TR", "topics": [ "TR_Param_BayesGLM" ] }, { "page": "verbose_Param", "title": "verbose", "topics": [ "verbose_Param" ] } ], "_readme": "https://github.com/mandymejia/hrf/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "base64enc", "bitops", "boot", "broom", "bslib", "cachem", "car", "carData", "ciftiTools", "cli", "colorspace", "cowplot", "cpp11", "Deriv", "digest", "doBy", "dotCall64", "dplyr", "evaluate", "farver", "fastmap", "fields", "fMRItools", "fontawesome", "forecast", "Formula", "fracdiff", "fs", "generics", "ggplot2", "gifti", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "maps", "MASS", "Matrix", "MatrixModels", "matrixStats", "memoise", "mgcv", "microbenchmark", "mime", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "oro.nifti", "pbkrtest", "pillar", "pkgconfig", "purrr", "quantreg", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rgl", "rlang", "rmarkdown", "RNifti", "S7", "sass", "scales", "spam", "SparseM", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "tinytex", "urca", "utf8", "vctrs", "viridisLite", "withr", "xfun", "xml2", "yaml", "zoo" ], "_vignettes": [ { "source": "hrf_vignette.Rmd", "filename": "hrf_vignette.html", "title": "Hemodynamic Response Function Modeling with hrf", "author": "Damon Pham & Amanda Mejia", "engine": "knitr::rmarkdown", "headings": [ "HRF modeling", "Design matrix construction" ], "created": "2025-01-21 21:22:10", "modified": "2025-01-21 21:22:10", "commits": 1 } ], "_score": 4.414973347970818, "_indexed": true, "_nocasepkg": "hrf", "_universes": [ "mandymejia" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-06-22T10:21:54.000Z", "distro": "noble", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/9afef39980162a958f370b7bdbd6661a6e31efc5923dc9788fdc50c412b77b32", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" }, { "r": "4.6.0", "os": "linux", "version": "0.1.3", "date": "2026-06-22T10:21:54.000Z", "distro": "noble", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/e2c7051ab9cfca4a2437368ce05043098322cc1c094d28b93bca9e8116e4d6a1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-06-22T10:20:45.000Z", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/4d8bbcdf3a987e4e8fa6b2cbba685837b3ff25789d8aca1dbd212d05a7ad922b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" }, { "r": "4.6.0", "os": "mac", "version": "0.1.3", "date": "2026-06-22T10:21:00.000Z", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/2d6fa4883f89195a80ece6b6a200e9ce18f89dddeb85a82750110475a9e26e5f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-06-22T10:25:52.000Z", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/2a04bc4eea3dc528b8bf1095fecf91bc1fb075a7e6b815d9dbe3b8bf6b61ce2b", "status": "success", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-06-22T10:25:29.000Z", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/6c2fae6b45ff7ee77a43a1341141485c5c6869113aabae39296e34159d253032", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-06-22T10:20:04.000Z", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/7d7b480a3e91c5fc33e61ea0fa296b8ecb8e89d3ddb591cbed610cf271b26563", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" }, { "r": "4.6.0", "os": "win", "version": "0.1.3", "date": "2026-06-22T10:19:54.000Z", "commit": "2fabb578e55313f41ec52655934ef1e896e15987", "fileid": "https://r2.ropensci.org/37ee9b20e8c02494ddd68a9d63ba24c5cdca2390b061735552e10a8053b7aa5a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mandymejia/actions/runs/27945510092" } ] }