Package: fMRIscrub
Type: Package
Title: Scrubbing and Other Data Cleaning Routines for fMRI
Version: 0.13.0
Authors@R: c(
    person(given = "Amanda",
           family = "Mejia",
           email = "mandy.mejia@gmail.com",
           role = c("aut", "cre")),
    person(given = "John",
           family = "Muschelli",
           email = "muschellij2@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0001-6469-1750")),
    person(given = "Damon",
           family = "Pham",
           email = "damondpham@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0001-7563-4727")),
    person(given = "Daniel",
           family = "McDonald",
           email = "daniel@stat.ubc.ca",
           role = c("ctb")),
    person(given = "Fatma",
           family = "Parlak",
           email = "fparlak@iu.edu",
           role = c("ctb"))
    )
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Description: Data-driven fMRI denoising with projection scrubbing (Pham
        et al (2022) <doi:10.1016/j.neuroimage.2023.119972>). Also
        includes routines for DVARS (Derivatives VARianceS) (Afyouni
        and Nichols (2018) <doi:10.1016/j.neuroimage.2017.12.098>),
        motion scrubbing (Power et al (2012)
        <doi:10.1016/j.neuroimage.2011.10.018>), aCompCor (anatomical
        Components Correction) (Muschelli et al (2014)
        <doi:10.1016/j.neuroimage.2014.03.028>), detrending, and
        nuisance regression. Projection scrubbing is also applicable to
        other outlier detection tasks involving high-dimensional data.
Depends: R (>= 3.5.0)
License: GPL-3
Encoding: UTF-8
Imports: MASS, cellWise, e1071, fMRItools (>= 0.2.2), pesel,
        robustbase, stats, expm, utils, gamlss
Suggests: corpcor, cowplot, ciftiTools, gifti, knitr, rmarkdown,
        RNifti, ggplot2, fastICA, oro.nifti, testthat (>= 3.0.0), covr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/mandymejia/fMRIscrub
BugReports: https://github.com/mandymejia/fMRIscrub/issues
LazyData: true
Config/pak/sysreqs: libicu-dev
Repository: https://mandymejia.r-universe.dev
Date/Publication: 2025-03-28 20:02:44 UTC
RemoteUrl: https://github.com/mandymejia/fmriscrub
RemoteRef: HEAD
RemoteSha: f6b489571429f2b7ae87ba36f63ebf540196eac9
NeedsCompilation: no
Packaged: 2026-07-04 23:52:19 UTC; root
Author: Amanda Mejia [aut, cre],
  John Muschelli [aut] (ORCID: <https://orcid.org/0000-0001-6469-1750>),
  Damon Pham [aut] (ORCID: <https://orcid.org/0000-0001-7563-4727>),
  Daniel McDonald [ctb],
  Fatma Parlak [ctb]