Package: templateICAr
Type: Package
Title: Estimate Brain Networks and Connectivity with ICA and Empirical
        Priors
Version: 0.11.3
Authors@R: c(
    person(given = "Amanda",
           family = "Mejia",
           email = "mandy.mejia@gmail.com",
           role = c("aut", "cre")),
    person(given = "Damon",
           family = "Pham",
           email = "damondpham@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0001-7563-4727")),
    person(given = "Daniel",
           family = "Spencer",
           email = "danieladamspencer@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0002-9705-3605")),
    person(given = "Mary Beth",
           family = "Nebel",
           email = "Nebel@kennedykrieger.org",
           role = c("ctb"))
    )
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Description: Implements the template ICA (independent components
        analysis) model proposed in Mejia et al. (2020)
        <doi:10.1080/01621459.2019.1679638> and the spatial template
        ICA model proposed in Mejia et al. (2022)
        <doi:10.1080/10618600.2022.2104289>. Both models estimate
        subject-level brain as deviations from known population-level
        networks, which are estimated using standard ICA algorithms.
        Both models employ an expectation-maximization algorithm for
        estimation of the latent brain networks and unknown model
        parameters. Includes direct support for 'CIFTI', 'GIFTI', and
        'NIFTI' neuroimaging file formats. Note, this package has been
        deprecated and superseded by 'BayesBrainMap', which includes
        model improvements and new names for the core functions.
Depends: R (>= 3.6.0)
License: GPL-3
Additional_repositories: https://inla.r-inla-download.org/R/testing
Encoding: UTF-8
Imports: abind, fMRItools (>= 0.5.3), fMRIscrub (>= 0.14.5), foreach,
        ica, Matrix, matrixStats, methods, pesel, SQUAREM, stats, utils
Suggests: ciftiTools (>= 0.13.2), excursions, RNifti, oro.nifti, gifti,
        covr, parallel, doParallel, knitr, rmarkdown, INLA, testthat
        (>= 3.0.0)
Roxygen: list(markdown = TRUE)
URL: https://cran.r-project.org/package=BayesBrainMap
BugReports: https://github.com/mandymejia/templateICAr/issues
Config/roxygen2/version: 8.1.0
Repository: https://mandymejia.r-universe.dev
Date/Publication: 2026-09-17 05:18:29 UTC
RemoteUrl: https://github.com/mandymejia/templateicar
RemoteRef: HEAD
RemoteSha: 455875c852dc73f3488348240f455fab378b286e
NeedsCompilation: no
Packaged: 2026-09-29 17:06:27 UTC; root
Author: Amanda Mejia [aut, cre],
  Damon Pham [aut] (ORCID: <https://orcid.org/0000-0001-7563-4727>),
  Daniel Spencer [ctb] (ORCID: <https://orcid.org/0000-0002-9705-3605>),
  Mary Beth Nebel [ctb]