Package: templateICAr
Type: Package
Title: Estimate Brain Networks and Connectivity with ICA and Empirical
        Priors
Version: 0.10.0
Authors@R: c(
    person(given = "Amanda",
           family = "Mejia",
           email = "mandy.mejia@gmail.com",
           role = c("aut", "cre")),
    person(given = "Damon",
           family = "Pham",
           email = "damondpham@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0001-7563-4727")),
    person(given = "Daniel",
           family = "Spencer",
           email = "danieladamspencer@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0002-9705-3605")),
    person(given = "Mary Beth",
           family = "Nebel",
           email = "Nebel@kennedykrieger.org",
           role = c("ctb"))
    )
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Description: Implements the template ICA (independent components
        analysis) model proposed in Mejia et al. (2020)
        <doi:10.1080/01621459.2019.1679638> and the spatial template
        ICA model proposed in proposed in Mejia et al. (2022)
        <doi:10.1080/10618600.2022.2104289>. Both models estimate
        subject-level brain as deviations from known population-level
        networks, which are estimated using standard ICA algorithms.
        Both models employ an expectation-maximization algorithm for
        estimation of the latent brain networks and unknown model
        parameters. Includes direct support for 'CIFTI', 'GIFTI', and
        'NIFTI' neuroimaging file formats.
Depends: R (>= 3.6.0)
License: GPL-3
Additional_repositories: https://inla.r-inla-download.org/R/testing
Encoding: UTF-8
Imports: abind, fMRItools (>= 0.5.3), fMRIscrub (>= 0.14.5), foreach,
        ica, Matrix, matrixStats, methods, pesel, SQUAREM, stats, utils
Suggests: ciftiTools (>= 0.13.2), excursions, RNifti, oro.nifti, gifti,
        covr, parallel, doParallel, knitr, rmarkdown, INLA, testthat
        (>= 3.0.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/mandymejia/templateICAr
BugReports: https://github.com/mandymejia/templateICAr/issues
Repository: https://mandymejia.r-universe.dev
Date/Publication: 2025-05-20 19:12:51 UTC
RemoteUrl: https://github.com/mandymejia/templateicar
RemoteRef: HEAD
RemoteSha: d3b501c02b536e2ebe5538e0be1332945affcb96
NeedsCompilation: no
Packaged: 2026-07-05 06:12:19 UTC; root
Author: Amanda Mejia [aut, cre],
  Damon Pham [aut] (ORCID: <https://orcid.org/0000-0001-7563-4727>),
  Daniel Spencer [ctb] (ORCID: <https://orcid.org/0000-0002-9705-3605>),
  Mary Beth Nebel [ctb]