Package: fMRIscrub 0.13.0

fMRIscrub: Scrubbing and Other Data Cleaning Routines for fMRI

Data-driven fMRI denoising with projection scrubbing (Pham et al (2022) <doi:10.1016/j.neuroimage.2023.119972>). Also includes routines for DVARS (Derivatives VARianceS) (Afyouni and Nichols (2018) <doi:10.1016/j.neuroimage.2017.12.098>), motion scrubbing (Power et al (2012) <doi:10.1016/j.neuroimage.2011.10.018>), aCompCor (anatomical Components Correction) (Muschelli et al (2014) <doi:10.1016/j.neuroimage.2014.03.028>), detrending, and nuisance regression. Projection scrubbing is also applicable to other outlier detection tasks involving high-dimensional data.

Authors:Amanda Mejia [aut, cre], John Muschelli [aut], Damon Pham [aut], Daniel McDonald [ctb], Fatma Parlak [ctb]

fMRIscrub_0.13.0.tar.gz
fMRIscrub_0.13.0.zip(r-4.7)fMRIscrub_0.13.0.zip(r-4.6)fMRIscrub_0.13.0.zip(r-4.5)
fMRIscrub_0.13.0.tgz(r-4.6-any)fMRIscrub_0.13.0.tgz(r-4.5-any)
fMRIscrub_0.13.0.tar.gz(r-4.7-any)fMRIscrub_0.13.0.tar.gz(r-4.6-any)
fMRIscrub_0.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
fMRIscrub/json (API)

# Install 'fMRIscrub' in R:
install.packages('fMRIscrub', repos = c('https://mandymejia.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mandymejia/fmriscrub/issues

Datasets:
  • Dat1 - First Example Time Series from the ABIDE
  • Dat2 - Second Example Time Series from the ABIDE

On CRAN:

Conda:

5.27 score 6 stars 2 packages 26 scripts 674 downloads 13 exports 48 dependencies

Last updated from:f6b4895714. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR175
source / vignettesOK198
linux-release-x86_64ERROR199
macos-release-arm64ERROR102
macos-oldrel-arm64ERROR111
windows-develERROR141
windows-releaseERROR138
windows-oldrelERROR125
wasm-releaseOK160

Exports:artifact_imagesDVARSFDflags_to_nuis_spikeshigh_kurtosisleveragepscrubrob_stabilizerobdistscrubscrub_xiftiSHASH_outSHASH_to_normal

Dependencies:cellWiseclassclicpp11DEoptimRe1071expmfarverfMRItoolsgamlssgamlss.datagamlss.distggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmvtnormnlmepcaPPpeselplyrproxyR6RColorBrewerRcppRcppArmadilloreshape2rlangrobustbaserrcovS7scalesshapestringistringrsurvivalsvdvctrsviridisLitewithr