Package: fMRIscrub 0.13.0

fMRIscrub: Scrubbing and Other Data Cleaning Routines for fMRI

Data-driven fMRI denoising with projection scrubbing (Pham et al (2022) <doi:10.1016/j.neuroimage.2023.119972>). Also includes routines for DVARS (Derivatives VARianceS) (Afyouni and Nichols (2018) <doi:10.1016/j.neuroimage.2017.12.098>), motion scrubbing (Power et al (2012) <doi:10.1016/j.neuroimage.2011.10.018>), aCompCor (anatomical Components Correction) (Muschelli et al (2014) <doi:10.1016/j.neuroimage.2014.03.028>), detrending, and nuisance regression. Projection scrubbing is also applicable to other outlier detection tasks involving high-dimensional data.

Authors:Amanda Mejia [aut, cre], John Muschelli [aut], Damon Pham [aut], Daniel McDonald [ctb], Fatma Parlak [ctb]

fMRIscrub_0.13.0.tar.gz
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fMRIscrub_0.13.0.tgz(r-4.4-any)fMRIscrub_0.13.0.tgz(r-4.3-any)
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fMRIscrub.pdf |fMRIscrub.html
fMRIscrub/json (API)
NEWS

# Install 'fMRIscrub' in R:
install.packages('fMRIscrub', repos = c('https://mandymejia.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mandymejia/fmriscrub/issues

Datasets:
  • Dat1 - First Example Time Series from the ABIDE
  • Dat2 - Second Example Time Series from the ABIDE

On CRAN:

4.56 score 4 stars 1 packages 15 scripts 273 downloads 13 exports 54 dependencies

Last updated 1 years agofrom:7ee8d6defb. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-winERROROct 29 2024
R-4.5-linuxERROROct 29 2024
R-4.4-winERROROct 29 2024
R-4.4-macERROROct 29 2024
R-4.3-winERROROct 29 2024
R-4.3-macERROROct 29 2024

Exports:artifact_imagesDVARSFDflags_to_nuis_spikeshigh_kurtosisleveragepscrubrob_stabilizerobdistscrubscrub_xiftiSHASH_outSHASH_to_normal

Dependencies:cellWiseclassclicolorspaceDEoptimRe1071expmfansifarverfMRItoolsgamlssgamlss.datagamlss.distggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnlmepcaPPpeselpillarpkgconfigplyrproxyR6RColorBrewerRcppRcppArmadilloreshape2rlangrobustbaserrcovscalesshapestringistringrsurvivalsvdtibbleutf8vctrsviridisLitewithr