Package: fMRIscrub 0.13.0
fMRIscrub: Scrubbing and Other Data Cleaning Routines for fMRI
Data-driven fMRI denoising with projection scrubbing (Pham et al (2022) <doi:10.1016/j.neuroimage.2023.119972>). Also includes routines for DVARS (Derivatives VARianceS) (Afyouni and Nichols (2018) <doi:10.1016/j.neuroimage.2017.12.098>), motion scrubbing (Power et al (2012) <doi:10.1016/j.neuroimage.2011.10.018>), aCompCor (anatomical Components Correction) (Muschelli et al (2014) <doi:10.1016/j.neuroimage.2014.03.028>), detrending, and nuisance regression. Projection scrubbing is also applicable to other outlier detection tasks involving high-dimensional data.
Authors:
fMRIscrub_0.13.0.tar.gz
fMRIscrub_0.13.0.zip(r-4.7)fMRIscrub_0.13.0.zip(r-4.6)fMRIscrub_0.13.0.zip(r-4.5)
fMRIscrub_0.13.0.tgz(r-4.6-any)fMRIscrub_0.13.0.tgz(r-4.5-any)
fMRIscrub_0.13.0.tar.gz(r-4.7-any)fMRIscrub_0.13.0.tar.gz(r-4.6-any)
fMRIscrub_0.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fMRIscrub/json (API)
NEWS
| # Install 'fMRIscrub' in R: |
| install.packages('fMRIscrub', repos = c('https://mandymejia.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mandymejia/fmriscrub/issues
Last updated from:f6b4895714. Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 192 | ||
| source / vignettes | OK | 220 | ||
| linux-release-x86_64 | ERROR | 191 | ||
| macos-release-arm64 | ERROR | 135 | ||
| macos-oldrel-arm64 | ERROR | 145 | ||
| windows-devel | ERROR | 133 | ||
| windows-release | ERROR | 131 | ||
| windows-oldrel | ERROR | 132 | ||
| wasm-release | OK | 130 |
Exports:artifact_imagesDVARSFDflags_to_nuis_spikeshigh_kurtosisleveragepscrubrob_stabilizerobdistscrubscrub_xiftiSHASH_outSHASH_to_normal
Dependencies:cellWiseclassclicpp11DEoptimRe1071expmfarverfMRItoolsgamlssgamlss.datagamlss.distggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmvtnormnlmepcaPPpeselplyrproxyR6RColorBrewerRcppRcppArmadilloreshape2rlangrobustbaserrcovS7scalesshapestringistringrsurvivalsvdvctrsviridisLitewithr
